• Agmenellum quadruplicatum (Meneghini) Brébisson, 1839 accepted as Merismopedia quadruplicata (Meneghini) Trevisan, 1845
• Anathece bachmannii (Komárek & Cronberg) Komárek, Kastovsky & Jezberová, 2011
• Anathece clathrata (West & G.S.West) Komárek, Kastovsky & Jezberová, 2011
• Anathece endophytica (W. & G.S. West) Komárek, Kastovsky & Jezberová, 2011
• Anathece minutissima (West) Komárek, Kastovsky & Jezberová, 2011
• Anathece smithii (Komárková-Legnerová & Cronberg) Komárek, Kastovsky & Jezberová, 2011
• Holopedium dietelii (Richter) Migula, 1905 accepted as Microcrocis geminata (Lagerheim) Geitler, 1942
• Jaaginema angustissimum (West & G.S.West) Anagnostidis & Komárek, 1988
• Jaaginema geminatum (Schwabe ex Gomont) Anagnostidis & Komárek, 1988
• Jaaginema mauchanum (Claus) Anagnostidis & Komárek, 1988
• Jaaginema minimum (Gicklhorn) Anagnostidis & Komárek, 1988
• Jaaginema profundum (Schröter & Kirchner) Anagnostidis & Komárek, 1988
• Jaaginema pseudogeminatum (G.Schmid) Anagnostidis & Komárek, 1988
• Jaaginema subtilissimum (Kützing ex Forti) Anagnostidis & Komárek, 1988
• Rhabdogloea linearis (Geitler) Komárek, 1983
• Rhabdogloea minuta B.Hickel, 1991
• Synechococcus bigranulatus Skuja, 1933 accepted as Thermostichus bigranulatus (Skuja) Komárek & Strunecky, 2020
• Synechococcus elongatus (Nägeli) Nägeli, 1849
• Synechococcus salinarum Komárek, 1956
• Woronichinia compacta (Lemmermann) Komárek & Hindák, 1988
• Woronichinia elorantae Komárek & Komárková-Legnerová, 1992
• Woronichinia fusca (Skuja) Komárek & Hindák, 1988
• Woronichinia karelica Komárek & Komárková-Legnerová, 1992
• Woronichinia naegeliana (Unger) Elenkin, 1933