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  MarBEF: MARINE BIOLOGY meets INFORMATION TECHNOLOGY – new era in marine biology begins
Posted on 03 July 2006 09:54:00 by webmaster
 
 
Marine biologists and information technologists launch new inter-disciplinary research area called "ocean biodiversity informatics".

Download full-text PRESS RELEASE: MARINE BIOLOGY meets INFORMATION TECHNOLOGY – new era in marine biology begins.

The publication of a special Theme Section of 9 papers in the prestigious international marine science journal Marine Ecology Progress Series marks the official recognition of a new inter-disciplinary area of research. Marine biologists are using the latest online information technologies to share, map, analyse and model data from many different sources to reveal global patterns in marine biodiversity. Papers in the special publication provide examples of how ocean biodiversity informatics benefits research on whales, seals, sea birds, sea turtles, fisheries, anemone fish and their host anemones, and deep-sea life.

Thinking big
‘Ocean Biodiversity Informatics’ (OBI) heralds a new era in biological research and management that is revolutionising the way we approach marine biodiversity research. OBI uses computer technology to manage marine biodiversity information (capturing, storing, searching for, retrieving, visualising, mapping, modelling, analysing and publishing data). This allows more users better and faster access to biodiversity information than ever before. The global nature of phenomena such as climate change, over-fishing, and other changes in ecosystems, would not have been recognised had it not been for informatics-aided analyses.

The prospect of data mining and exploration on a global scale is enough to gladden the hearts of marine scientists across the world, as marine biology embraces the computer age. Access to global data through OBI will allow for worldwide gap analysis resulting in new perspectives on current research, the promotion of collaborations between research groups and real data sets for teaching purposes, to mention just a few of the potential benefits. “OBI is an initiative of the 21st century and will make conventional marine biodiversity research more dynamic and comprehensive, with a range of constantly evolving online tools” say Mark J. Costello and Edward Van Berghe in a paper to be published in the Marine Ecology Progress Series.

Culture change
Data on marine species and their environment (be it regional or on a global scale) is the ‘fuel’ on which OBI operates and therefore complements the traditional disciplines of taxonomy, ecology and biogeography. However, many scientists are ignoring pleas from international scientific organisations, including the International Council for Science (ICSU), to make their data public. The irony is that most data collections are paid for, directly or indirectly, by [public] funds. Taxonomists have led the way with regard to [public] accessibility of data, as type specimens are lodged in museums for the common good. It is suggested that there should be a protocol for scientists where ecological data would be made available in a similar way. OBI will make more data available to more people more quickly than ever before, including the repatriation of data and information collected in Developing Countries.

According to Mark Costello of the University of Auckland (New Zealand), a change in biological science culture to one of open-access to primary data is essential for accountability of research. Also, “a greater recognition of the value of biodiversity data accessibility by the scientific community, publishers, funding agencies and employers is vital”, commented Edward Vanden Berghe of the Flanders Marine Institute (Belgium). This change in culture is currently underway. It is compared to the invention of printing centuries before, and like it, will bring more information and opportunities for discovery to people all over the world.

Fit for purpose
One of the most challenging aspects of any informatics system is quality assurance. This is particularly important when you consider all the possible uses to which data can be put, and the number of steps from the original point of data collection to the end use. However a data or information system is designed, its continuity and development depend on support from the scientific community. This community includes contributors, evaluators of funding applications, users and science policy makers.

The flagship OBI programme is the Ocean Biogeographic Information System (www.iobis.org), which is already publishing almost 10 million location records for 61,000 marine species from a global network of over 100 databases. OBIS is the information component of the Census of Marine Life, the largest ever global marine biology discovery programme (www.coml.org).

OBI has been championed by Edward Vanden Berghe (Flanders Marine Institute, Belgium) and Mark Costello (University of Auckland, New Zealand), who organised a conference on this theme in Hamburg (Germany). Further information on OBI can be obtained from their paper: Costello & Vanden Berghe ‘Ocean biodiversity informatics’: a new era in marine biology research and management. Marine Ecology Progress Series. All papers in the Theme Section in Marine Ecology Progress Series are freely available from: http://www.int-res.com/abstracts/meps/v316/

This paper is a contribution to the following projects funded by the European Union research programmes:

  • ERMS, European Register of Marine Species (MAS3-CT97-0146);
  • MarBEF, Marine Biodiversity and Ecosystem Functioning, Network of Excellence (GOCE-CT-2003-505446);
  • Species 2000 Europa (EVR1-CT-2002-20011);
  • BioCASe, Biological Collection Access Service (EVR1-CT-2001-40017)
  • EDIT, Toward the European Distributed Institute of Taxonomy (GOCE-CT-2005-018340) Network of Excellence.

For additional discussion of the Census of Marine Life (CoML) or the Ocean Biogeographic Information System (OBIS):