1. Species Chroococcus aeruginosus N.L.Gardner, 1927
2. Species Chroococcus alpinus Schmidle, 1899
3. Species Chroococcus atrochalybeus Hansgirg, 1893
4. Species Chroococcus aurantio-fuscus (Kützing) Rabenhorst, 1865
5. Species Chroococcus aurantius (C.Agardh) Wille, 1918
6. Species Chroococcus aureus (Kützing) Rabenhorst
7. Species Chroococcus batavus Joosten, 2006
8. Species Chroococcus bernardii Oye, 1922
9. Species Chroococcus catenatus Komárek & E.Novelo, 1994
10. Species Chroococcus cohaerens (Brébisson) Nägeli, 1849
11. Species Chroococcus consociatus Hariot, 1891
12. Species Chroococcus constrictus N.L.Gardner, 1927
13. Species Chroococcus crassus (Kützing) Nägeli, 1849
14. Species Chroococcus cronbergae J.Komárek & E.Novelo, 1994
15. Species Chroococcus cronbergiae Komárek & E.Novelo, 1994
16. Species Chroococcus cubicus N.L.Gardner, 1927
17. Species Chroococcus cumulatus Bachmann, 1921
18. Species Chroococcus decoloratus Migula, 1906
19. Species Chroococcus deltoides Komárek & E.Novelo, 1994
20. Species Chroococcus dispersus (Keissler) Lemmermann, 1904
21. Species Chroococcus distans (G.M.Smith) Komárková-Legnerová & Cronberg, 1994
22. Species Chroococcus endophytica J.J.Copeland, 1936
23. Species Chroococcus epiphyticus C.-C.Jao, 1964
24. Species Chroococcus ercegovicii Komárek & Anagnostidis, 1995
25. Species Chroococcus giganteus West, 1892
26. Species Chroococcus globosus (Elenkin) Hindák, 1978
27. Species Chroococcus glomeratus (Meneghini) Forti, 1907
28. Species Chroococcus goetzei Schmidle, 1902
29. Species Chroococcus gomontii Nygaard, 1926
30. Species Chroococcus hansgirgii Schmidle, 1900
31. Species Chroococcus heanogloios N.L.Gardner, 1927
32. Species Chroococcus helveticus Nägeli, 1849
33. Species Chroococcus hematodes Unknown authority
34. Species Chroococcus huberi G.De Toni, 1936
35. Species Chroococcus indicus Zeller, 1873
36. Species Chroococcus irregularis Huber-Pestalozzi, 1929
37. Species Chroococcus lithophilus Ercegovic, 1925
38. Species Chroococcus macrococcus (Kützing) Rabenhorst, 1863
39. Species Chroococcus major Komarék & Komákova-Legnerová, 2007
40. Species Chroococcus mediocris N.L.Gardner, 1927
41. Species Chroococcus membraninus (Meneghini) Nägeli, 1849
42. Species Chroococcus minimus (Keissler) Lemmermann, 1904
43. Species Chroococcus minor (Kützing) Nägeli, 1849
44. Species Chroococcus minutissimus N.L.Gardner, 1927
45. Species Chroococcus minutus (Kützing) Nägeli, 1849
46. Species Chroococcus mipitanensis (Wolszynska) Geitler, 1925
47. Species Chroococcus molischii Schiller, 1956
48. Species Chroococcus montanus Hansgirg, 1891
49. Species Chroococcus multicoloratus R.D.Wood, 1869
50. Species Chroococcus muralis N.L.Gardner, 1927
51. Species Chroococcus mutisii González Guerrero, 1946
52. Species Chroococcus nanoplanticus Azevedo, Sant'Anna, Senna, Komárek & Komárková, 2003
53. Species Chroococcus obliteratus Richter, 1885
54. Species Chroococcus occidentalis (N.L.Gardner) Komárek & Komárková-Legnerová, 2007
55. Species Chroococcus pallidus Nägeli, 1849
56. Species Chroococcus planctonicus Bethge, 1935
57. Species Chroococcus polyedriformis Schmidle, 1902
58. Species Chroococcus prescottii Drouet & Daily, 1942
59. Species Chroococcus pulcherrimus Welsh, 1965
60. Species Chroococcus purpureus J.W.Snow, 1903
61. Species Chroococcus pyriformis A.W.Bennett, 1888
62. Species Chroococcus quaternarius M.D.Zalessky, 1926
63. Species Chroococcus reeuwijkanus Joosten, 2006
64. Species Chroococcus refractus R.D.Wood, 1869
65. Species Chroococcus rufescens (Kützing) Nägeli, 1849
66. Species Chroococcus scherffelianus E.Kol, 1928
67. Species Chroococcus schizodermaticus West, 1892
68. Species Chroococcus smaragdinus Hauck, 1888
69. Species Chroococcus solitarius Eichler, 1896
70. Species Chroococcus sonorensis Drouet & Daily, 1942
71. Species Chroococcus spelaeus Ercegovic, 1925
72. Species Chroococcus splendidus C.-C.Jao, 1944
73. Species Chroococcus submarinus (Hansgirg) Kovácik, 1988
74. Species Chroococcus subnudus (Hansgirg) G.Cronberg & J.Komárek, 1994
75. Species Chroococcus subsphaericus N.L.Gardner, 1927
76. Species Chroococcus subtilissimus Skuja, 1937
77. Species Chroococcus subviolaceus (Wille) Gama Jr., Laughinghouse IV & Sant'Anna, 2014
78. Species Chroococcus tenacoides J.J.Copeland, 1936
79. Species Chroococcus tenax (Kirchner) Hieronymus, 1892
80. Species Chroococcus thermalis (Meneghini) Nägeli, 1849
81. Species Chroococcus turgidus (Kützing) Nägeli, 1849
82. Species Chroococcus turicensis (Nägeli) Hansgirg, 1887
83. Species Chroococcus vacuolatus Skuja, 1939
84. Species Chroococcus varius A.Braun, 1876
85. Species Chroococcus verrucosus Krieger, 1931
86. Species Chroococcus violaceus Rabenhorst, 1865
87. Species Chroococcus westii J.B.Petersen, 1923
88. Species Chroococcus yellowstonensis Copeland, 1936
89. Species Chroococcus aphanocapsoides Skuja, 1964 accepted as Eucapsis aphanocapsoides (Skuja) Komárek & Hindák, 2016
90. Species Chroococcus atrovirens (Corda) Hansgirg, 1891 accepted as Protococcus atrovirens Corda, 1829
91. Species Chroococcus bituminosus (Bory de Saint-Vincent) Hansgirg, 1892 accepted as Gloeocapsa bituminosa (Bory) Kützing, 1849 (synonym)
92. Species Chroococcus calcicola Anand, 1937 accepted as Chroococcus cohaerens (Brébisson) Nägeli, 1849 (synonym)
93. Species Chroococcus caldariorum (Hansgirg) Hansgirg, 1893 accepted as Gloeocapsa bituminosa (Bory) Kützing, 1849 (synonym)
94. Species Chroococcus decorticans A.Braun, 1850 accepted as Gloeocapsa decorticans (A.Braun) P.Richter, 1925 (synonym)
95. Species Chroococcus dimidiatus (Kützing) Nägeli, 1849 accepted as Chroococcus turgidus (Kützing) Nägeli, 1849 (synonym)
96. Species Chroococcus fuscoviolaceus Hansgirg, 1890 accepted as Chamaesiphon fuscoviolaceus (Hansgirg) Margalef, 1952
97. Species Chroococcus indicus C.Bernard, 1908 accepted as Chroococcus bernardii Oye, 1922
98. Species Chroococcus limneticus Lemmermann, 1898 accepted as Limnococcus limneticus (Lemmermann) Komárková, Jezberová, O.Komárek & Zapomelová, 2010 (basionym)
99. Species Chroococcus microscopicus Komárková-Legnerová & G.Cronberg, 1994 accepted as Eucapsis microscopica (Komárková-Legnerová & G.Cronberg) Komárek & Hindák, 2016
100. Species Chroococcus multicellularis H.-J.Chu, 1952 accepted as Chroococcus polyedriformis Schmidle, 1902 (synonym)
101. Species Chroococcus parallelepipedon Schmidle, 1901 accepted as Eucapsis parallelepipedon (Schmidle) Komárek & Hindák, 1989 (synonym)
102. Species Chroococcus protogenitus (Biasoletto) Hansgirg accepted as Microcystis protogenita (Biasoletto) Rabenhorst, 1865
103. Species Chroococcus raspaigellae Hauck, 1888 accepted as Aphanocapsa raspaigellae (Hauck) Frémy, 1933
104. Species Chroococcus sarcinoides Huber-Pestalozzi, 1929 accepted as Chroococcus huberi G.De Toni, 1936
105. Species Chroococcus siderochlamys Skuja, 1948 accepted as Gloeocapsa siderochlamys (Skuja) Starmach, 1966 (synonym)
106. Species Chroococcus simmeri Schmidle, 1899 accepted as Gloeocapsopsis magma (Brébisson) Komárek & Anagnostidis ex Komárek, 1993 (synonym)
107. Species Chroococcus thermophilus Wood, 1869 accepted as Gloeocapsa thermophila (Wood) Claus, 1959 (synonym)
108. Species Chroococcus virescens Hantzsch, 1865 accepted as Chroococcus minutus (Kützing) Nägeli, 1849 (synonym)
109. Species Chroococcus amethystinus A.Nash, 1938 (uncertain)
110. Species Chroococcus novae-zelandiae A.Nash, 1938 (uncertain)
111. Species Chroococcus sphaericus A.Nash, 1938 (uncertain)
112. Species Chroococcus turgidus (Kützing) Lagerheim (uncertain, uncertain taxonomic status subjected to verification)
113. Species Chroococcus viridis Kützing (uncertain)

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