Marine Biodiversity and Ecosystem Functioning
EU Network of Excellence

 
Main Menu

· Home
· Contacts
· Data Systems
· Documents
· FAQ
· Links
· MarBEF Open Archive
· Network Description
· Outreach
· Photo Gallery
· Quality Assurance
· Register of Resources
· Research Projects
· Rules and Guidelines
· Training
· Wiki
· Worldconference

 

Register of Resources (RoR)

 People  |  Datasets  |  Literature  |  Institutes  |  Projects 

[ report an error in this record ]basket (0): add | show Print this page

Aligning standards communities for Omics Biodiversity Data: sustainable Darwin Core-MIxS interoperability
Meyer, R.; Appeltans, W.; Duncan, W.D.; Dimitrova, M.; Gan, Y.M.; Jeppesen, T.S.; Mungall, C.; Paul, D.L.; Provoost, P.; Robertson, T.; Schriml, L.; Suominen, S.; Walls, R.; Sweetlove, M.; Ung, V.; Van de Putte, A.; Wallis, E.; Wieczorek, J.; Buttigieg, P.L. (2023). Aligning standards communities for Omics Biodiversity Data: sustainable Darwin Core-MIxS interoperability. Biodiversity Data Journal 11: e112420. https://dx.doi.org/10.3897/BDJ.11.e112420
In: Biodiversity Data Journal. Pensoft Publishers: Sofia. ISSN 1314-2836; e-ISSN 1314-2828
Peer reviewed article  

Available in  Authors 

Keyword
    Marine/Coastal
Author keywords
    microbiome; eDNA; biodiversity; information standards; omics; metadata; harmonization; FAIR; MIxS; Darwin Core

Authors  Top 
  • Meyer, R.
  • Appeltans, W., more
  • Duncan, W.D.
  • Dimitrova, M.
  • Gan, Y.M.
  • Jeppesen, T.S.
  • Mungall, C.
  • Paul, D.L.
  • Provoost, P.
  • Robertson, T.
  • Schriml, L.
  • Suominen, S.
  • Walls, R.
  • Sweetlove, M.
  • Ung, V.
  • Van de Putte, A.
  • Wallis, E.
  • Wieczorek, J.
  • Buttigieg, P.L.

Abstract

    The standardization of data, encompassing both primary and contextual information (metadata), plays a pivotal role in facilitating data (re-)use, integration, and knowledge generation. However, the biodiversity and omics communities, converging on omics biodiversity data, have historically developed and adopted their own distinct standards, hindering effective (meta)data integration and collaboration.

    In response to this challenge, the Task Group (TG) for Sustainable DwC-MIxS Interoperability was established. Convening experts from the Biodiversity Information Standards (TDWG) and the Genomic Standards Consortium (GSC) alongside external stakeholders, the TG aimed to promote sustainable interoperability between the Minimum Information about any (x) Sequence (MIxS) and Darwin Core (DwC) specifications.

    To achieve this goal, the TG utilized the Simple Standard for Sharing Ontology Mappings (SSSOM) to create a comprehensive mapping of DwC keys to MIxS keys. This mapping, combined with the development of the MIxS-DwC extension, enables the incorporation of MIxS core terms into DwC-compliant metadata records, facilitating seamless data exchange between MIxS and DwC user communities.

    Through the implementation of this translation layer, data produced in either MIxS- or DwC-compliant formats can now be efficiently brokered, breaking down silos and fostering closer collaboration between the biodiversity and omics communities. To ensure its sustainability and lasting impact, TDWG and GSC have both signed a Memorandum of Understanding (MoU) on creating a continuous model to synchronize their standards. These achievements mark a significant step forward in enhancing data sharing and utilization across domains, thereby unlocking new opportunities for scientific discovery and advancement.


All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy Top | Authors 


If any information here appears to be incorrect, please contact us
Back to Register of Resources
 
Quick links

MarBEF WIKI

Erasmus Mundus Master of Science in Marine Biodiversity and Conservation (EMBC)
Outreach

Science
Responsive Mode Programme (RMP) - Marie Nordstrom, copyright Aspden Rebecca

WoRMS
part of WoRMS logo

ERMS 2.0
Epinephelus marginatus Picture: JG Harmelin

EurOBIS

Geographic System

Datasets

 


Web site hosted and maintained by Flanders Marine Institute (VLIZ) - Contact data-at-marbef.org